Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
KIRP rs10935504 chr3:143707802 C/T 0.000166 289 24.8 30.7 19.63 KM Plot
KIRP rs10935981 chr3:153981027 T/C 0.000117 285 25.82 27.02 20 KM Plot
KIRP rs10937649 chr4:5543586 C/T 9.79E-5 282 25.6 27.2 12.93 KM Plot
KIRP rs10937650 chr4:5544739 G/A 0.000149 277 25.63 26.37 12.93 KM Plot
KIRP rs10953041 chr7:90875540 T/C 0.000123 284 26.1 25.57 21.93 KM Plot
KIRP rs10984957 chr9:123330336 A/C 1.09E-7 289 10.83 22.23 26.1 KM Plot
KIRP rs11013369 chr10:23583006 A/G 2.74E-5 289 26.18 23.17 10.3 KM Plot
KIRP rs11020555 chr11:93597918 T/C 0.000128 289 26.37 20.53 25.6 KM Plot
KIRP rs11025819 chr11:20959965 T/C 1.29E-5 289 25.57 30.8 19.58 KM Plot
KIRP rs11025821 chr11:20961322 G/C 1.29E-5 289 25.57 30.8 19.58 KM Plot
KIRP rs11025822 chr11:20962352 T/C 1.29E-5 289 25.57 30.8 19.58 KM Plot
KIRP rs11025823 chr11:20962472 G/A 1.29E-5 289 25.57 30.8 19.58 KM Plot
KIRP rs11025827 chr11:20963129 T/C 1.29E-5 289 25.57 30.8 19.58 KM Plot
KIRP rs11025833 chr11:20976659 A/T 1.28E-5 289 25.58 30.7 19.58 KM Plot
KIRP rs11064243 chr12:6629563 T/C 3.37E-5 288 23.63 27.43 5.38 KM Plot